search

xiezhq / ISEScan

A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
Apache License 2.0
84 stars 16 forks source link

Is there anyway to get the name of IS #51

Closed famiji closed 1 year ago

famiji commented 1 year ago

Thank you for providing such a good tool for local retrieval of IS sequences，it helps me a lot. But I still have a problem. When I read the output, I found that that the result file does not display the name of the inserted sequence, but only displays family and cluster of ISs. Is there a way to obtain the name of the sequence found in the results?

xiezhq commented 1 year ago

ISEScan does not provide the name of IS elements. One idea I have is to submit the IS sequence (predicted by ISEScan) to ISfinder database to get the name of the same or highly homology IS element and thus you can use the name provided by ISfinder.

Xie

famiji commented 1 year ago

Although it may be inconvenient, currently it seems that only this method can truly solve my problem

Zhiqun Xie @.***> 于2023年9月15日周五 21:49写道：

ISEScan does not provide the name of IS elements. One idea I have is to submit the IS sequence (predicted by ISEScan) to ISfinder database to get the name of the same or highly homology IS element and thus you can use that name provided by ISfinder.

Xie

— Reply to this email directly, view it on GitHub https://github.com/xiezhq/ISEScan/issues/51#issuecomment-1721315001, or unsubscribe https://github.com/notifications/unsubscribe-auth/APC4TG2T3X2WF472FZNV3LLX2RMEZANCNFSM6AAAAAA4X65VFM . You are receiving this because you authored the thread.Message ID: @.***>