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xihaoli / STAARpipeline-Tutorial

The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
GNU General Public License v3.0
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Number of jobs #31

Closed pthami07 closed 1 year ago

pthami07 commented 1 year ago

Hi Xihao, I am using a different dataset and have slightly different number of jobs for the following analyses: sum(jobs_num$individual_analysis_num) = 294 sum(jobs_num$sliding_window_num) = 574 sum(jobs_num$scang_num) = 1883 I'm not sure about how to determine the number of jobs for gene-centric coding and noncoding analyses. Please advise on whether I have to use similar number of jobs as you for gene-centric coding and noncoding analyses. Thanks.

xihaoli commented 1 year ago

Hi @pthami07,

Thanks for your question. For gene-centric coding and noncoding (including ncRNA) analyses, the number of jobs should be the same as used in the tutorial, since the total number of genes is the same for each subject.

Hope this helps.

Best, Xihao

pthami07 commented 1 year ago

Hi Xihao,

This helps. Thanks a lot for your timely response.

Best, Prisca.