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xihaoli / STAARpipeline-Tutorial

The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
GNU General Public License v3.0
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Error in results_plof_genome[, "cMAC"] : subscript out of bounds #52

Closed GACGAMA closed 3 months ago

GACGAMA commented 3 months ago

Hello Xihaoli

When using STAARpipelineSummary_Gene_Centric_Coding.r, I get the following error from Gene_Centric_Coding_Results_Summary:

[1] 1
...
[1] 91000
[1] 92000
Error in results_plof_genome[, "cMAC"] : subscript out of bounds

I tried different p-values without avail but I'm not sure what this errors means in this context

xihaoli commented 3 months ago

Hi @GACGAMA,

I think you are using STAARpipelineSummary package v0.9.7 to summarize the results but using STAARpipeline package v0.9.6 to run the analysis (which did not output cMAC). Could you please check?

Best, Xihao

GACGAMA commented 3 months ago

Updating the STAARpipelineSummary to 0.9.7 and the recreating outputs did work!