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xihaoli / STAARpipeline-Tutorial

The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
GNU General Public License v3.0
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What is the difference between the "results_temp" and "results_m" results? #68

Open jingydz opened 2 months ago

jingydz commented 2 months ago

When summarizing the results of the coding region, what is the difference between the "results_temp" and "results_m" results?

yuxinyuanqt commented 2 months ago

Hi @jingydz

Are you referring to the variables within the _Gene_Centric_Coding_ResultsSummary function? If so, I only found the "results_m" variable in the _Gene_Centric_Coding_ResultsSummary function. The "results_m" variable serves as an intermediate storage for results. For example, when generating a Manhattan plot, "results_m" is a data frame that holds the p-values for various functional categories of genes.

Hope this helps.

Best, Yuxin

xihaoli commented 3 weeks ago

Hi @jingydz,

Has your issue been resolved by @yuxinyuanqt?

Thanks, Xihao