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xihaoli / STAARpipeline

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
GNU General Public License v3.0
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Feature request: add to Biocontainers #13

Open wsjung opened 9 months ago

wsjung commented 9 months ago

Hi all,

It would be nice if the Dockerfile containing all the STAAR-related packages were added to biocontainers. Any interest?

xihaoli commented 8 months ago

Hi @wsjung,

Thanks for your comment. Sure, we plan to contact the BioContainers project and make STAAR-related packages available in BioContainers.

Best, Xihao

CristianRiccio commented 3 months ago

Hello, where is the Dockerfile? Thanks! Best wishes, Cristian.

xihaoli commented 3 months ago

Hi @CristianRiccio,

The STAARpipeline Dockerfile is here.

Thanks, Xihao

CristianRiccio commented 3 months ago

Thanks @xihaoli. I am looking for something like https://github.com/sheilagaynor/STAAR_workflow/blob/main/Dockerfile I think that Docker Hub contains the images but not the Dockerfile. Thanks, and best wishes, Cristian.

xihaoli commented 3 months ago

Hi @CristianRiccio,

We have developed a Docker image specifically tailored to run the STAARpipeline. This image includes all necessary STAAR-related packages that have been pre-installed. We will also maintain the Docker image when the STAAR-related packages are updated. The corresponding Dockerfile starts with a base image and installs these packages. Compared with the STAARpipeline Docker image, using the Dockerfile will take additional time to install the STAAR-related packages. Therefore, we do not provide a Dockerfile at this time.

Best, Xihao