Closed pengshiyin closed 1 year ago
It is possible to do so. The peak count matrix is usually binary, so it does not need much normalization. Besides, SCRIP preprocesses the peak count matrix with its default settings, and it works fine as long as the features' coordinates are correct. You can try it, and if you encounter any issues, please let me know.
Hi, I got the peak matrix with getMatrixFromProject() in ArchR, but I looked up the code and it seems that this peak matrix is not normalized. Can this peak count matrix be used in SCRIP enrich function?