Is parameter -t the meaning of the number of thread used by stage_one and stage_two?

xinehc / args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

MIT License

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Is parameter -t the meaning of the number of thread used by stage_one and stage_two? #32

Closed jiangyoufeng closed 12 months ago

jiangyoufeng commented 12 months ago

Hi！Thanks for your outstanding arg_oap! I want to ask that in the scripts args_oap stage_one -i input -o output -f fa -t 8 --database database.fasta args_oap stage_two -i output -t 8 --database database.fasta --structure1 structure.txt what is the exact meaning of -t? or where could I got that information?

jiangyoufeng commented 12 months ago

-t indeed means the number of threads, as noted in the log: INFO: BLAST settings: 155669575 bps, 104649 reads, 8 threads, mt_mode 1.