SARG version - Githubissues

LiZhihua1982 commented 9 months ago

I want to know which version of sarg database https://github.com/xinehc/args_oap/tree/main/src/args_oap/db. Thank you very much!

xinehc commented 9 months ago

SARG v3.2.1-S with additional one gene called capO

LiZhihua1982 commented 9 months ago

Dear Dr.Chen, Thank you very much! “To use customized databases (e.g. mobile genetic elements or heave metal resistant genes)” Do you have ang suggestions for the MGE and metal resistant genes database? In addition, How to obtain the risk assesment from ARGs-OAP 3.0 results?

xinehc commented 8 months ago

How to obtain the risk assesment from ARGs-OAP 3.0 results?

see: https://smile.hku.hk/ARGs/Indexing/riskranking

Do you have ang suggestions for the MGE and metal resistant genes database

you may try mobileOG-db and NCBI NDARO

LiZhihua1982 commented 8 months ago

Hi Chen, Do these have structure file?Thank you

Li Zhihua

获取 Outlook for iOShttps://aka.ms/o0ukef

发件人: Xi Chen @.> 发送时间: Thursday, February 29, 2024 2:32:09 PM 收件人: xinehc/args_oap @.> 抄送: Li Zhihua @.>; Author @.> 主题: Re: [xinehc/args_oap] SARG version (Issue #55)

How to obtain the risk assesment from ARGs-OAP 3.0 results?

see: https://smile.hku.hk/ARGs/Indexing/riskranking

Do you have ang suggestions for the MGE and metal resistant genes database

you may try mobileOG-db and NCBI NDARO

― Reply to this email directly, view it on GitHubhttps://github.com/xinehc/args_oap/issues/55#issuecomment-1970494697, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AJI2BJJNSQF7CWXYJKNTIO3YV3FOTAVCNFSM6AAAAABDZZLK3GVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZQGQ4TINRZG4. You are receiving this because you authored the thread.Message ID: @.***>

xinehc commented 8 months ago

You can get a structure file by parsing the fasta headers. I haven't used these databases.

xinehc / args_oap

SARG version #55