SARG version

[LiZhihua1982]

I want to know which version of sarg database https://github.com/xinehc/args_oap/tree/main/src/args_oap/db. Thank you very much!

[xinehc]

SARG v3.2.1-S with additional one gene called capO

[LiZhihua1982]

Dear Dr.Chen, Thank you very much! “To use customized databases (e.g. mobile genetic elements or heave metal resistant genes)” Do you have ang suggestions for the MGE and metal resistant genes database? In addition, How to obtain the risk assesment from ARGs-OAP 3.0 results?

[xinehc]

How to obtain the risk assesment from ARGs-OAP 3.0 results?

see: https://smile.hku.hk/ARGs/Indexing/riskranking

Do you have ang suggestions for the MGE and metal resistant genes database

you may try mobileOG-db and NCBI NDARO

[LiZhihua1982]

Hi Chen, Do these have structure file?Thank you

Li Zhihua

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发件人: Xi Chen @.> 发送时间: Thursday, February 29, 2024 2:32:09 PM 收件人: xinehc/args_oap @.> 抄送: Li Zhihua @.>; Author @.> 主题: Re: [xinehc/args_oap] SARG version (Issue #55)

How to obtain the risk assesment from ARGs-OAP 3.0 results?

see: https://smile.hku.hk/ARGs/Indexing/riskranking

Do you have ang suggestions for the MGE and metal resistant genes database

you may try mobileOG-db and NCBI NDARO

― Reply to this email directly, view it on GitHubhttps://github.com/xinehc/args_oap/issues/55#issuecomment-1970494697, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AJI2BJJNSQF7CWXYJKNTIO3YV3FOTAVCNFSM6AAAAABDZZLK3GVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZQGQ4TINRZG4. You are receiving this because you authored the thread.Message ID: @.***>

[xinehc]

You can get a structure file by parsing the fasta headers. I haven't used these databases.