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xinehc / args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
MIT License
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Question about extracted.filtered.fa #62

Open HuangLoong opened 2 months ago

HuangLoong commented 2 months ago

Hello, I have a question about the ’extracted.filtered.fa‘ file in the output of stage_two . May I ask if the file contains complete ARG-carrying read or only a partial sequence (sequence cutoff) hit in the database? If I want to obtain all ARG-carrying reads, is this file my target?

xinehc commented 2 months ago

they are all ARG-carrying reads that pass stage-two's cutoffs