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xinehc / melon

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
MIT License
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Does it work with Metabarcoding nanopore data? #2

Open DuttaAnik opened 2 months ago

DuttaAnik commented 2 months ago

Hi, Does Melon accept FastQ files from long-read metabarcoded data?

xinehc commented 2 months ago

Hi,

both fasta and fastq can be used as input, but make sure your fastq files are demultiplexed and quality-controlled.

DuttaAnik commented 2 months ago

Hi, thanks for the prompt reply. I will test out the tool then.