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xinhe-lab / GSFA

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
https://xinhe-lab.github.io/GSFA/
MIT License
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dotplot_beta_PIP not work #7

Open miderxi opened 10 months ago

miderxi commented 10 months ago

code of https://xinhe-lab.github.io/GSFA_paper/gsfa_result_interpret_LUHMES.html

dotplot_beta_PIP(t(gibbs_PM$Gamma_pm), t(gibbs_PM$beta_pm), marker_names = KO_names, reorder_markers = c(KO_names[KO_names!="Nontargeting"], "Nontargeting"), inverse_factors = F

  • ) Error in dotplot_beta_PIP(t(gibbs_PM$Gamma_pm), t(gibbs_PM$beta_pm), marker_names = KO_names, : unused arguments (marker_names = KO_names, reorder_markers = c(KO_names[KO_names != "Nontargeting"], "Nontargeting"), inverse_factors = F)