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xinhe-lab
/
ctwas
package for the causal TWAS project
https://xinhe-lab.github.io/ctwas/
MIT License
31
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12
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update tutorials
#40
kevinlkx
closed
1 week ago
0
update purity cutoff and combining PIP calculation
#39
kevinlkx
closed
1 week ago
0
update interface
#38
kevinlkx
closed
2 weeks ago
0
fix issues with insufficient memory when using mclapply
#37
kevinlkx
closed
3 weeks ago
0
fix link
#36
kevinlkx
closed
4 weeks ago
0
update interface of snp_map, LD_map, and region_data data structure
#35
kevinlkx
closed
4 weeks ago
0
About chromosome number Settings
#34
cauzhangjn
opened
1 month ago
1
excluding genes with poor performance
#33
Takahiro0113
opened
1 month ago
1
Error in susie examples
#32
pcarbo
closed
2 months ago
2
Fix variable bindings in use of dplyr and ggplot2 functions
#31
pcarbo
closed
2 months ago
1
A few function arguments that are undocumented
#30
pcarbo
closed
2 months ago
1
testthat test errors
#29
pcarbo
closed
2 months ago
1
Use inherits to check class of object
#28
pcarbo
closed
2 months ago
0
Remove help pages for non-exported functions
#27
pcarbo
closed
2 months ago
1
Undefined functions
#26
pcarbo
closed
2 months ago
4
Use of "aggregate" in sum_pip_across_contexts()
#25
pcarbo
closed
2 months ago
1
Add imports for all functions called explicitly from other packages
#24
pcarbo
closed
2 months ago
2
Miscellaneous improvements to ctwas
#23
pcarbo
opened
2 months ago
4
Update No-LD version
#22
kevinlkx
closed
3 months ago
0
Obtain NaN when estimating parameters
#21
MinghanQ
opened
3 months ago
0
update preprocessing weights
#20
kevinlkx
closed
3 months ago
0
Fine mapping with parameter estimation
#19
jgockley62
opened
4 months ago
8
add functions to convert genotype data to LD matrices
#18
kevinlkx
closed
4 months ago
0
Questions about LD Reference file
#17
DoraCChen
opened
4 months ago
6
Running genome-wide cTWAS with "ld_pgenfs=" option
#16
dhlee1013
closed
4 months ago
2
Question about SNP-gene correlation matrix
#15
Xinyu-Sun
closed
6 months ago
2
`index_regions` function very slow
#14
seanjosephjurgens
opened
6 months ago
1
updated tutorial for using cTWAS with summary statistics and package documentation
#13
kevinlkx
closed
6 months ago
0
add min_abs_corr parameter to allow setting purity threshold
#12
kevinlkx
closed
6 months ago
0
User option ignored in ctwas_impute_expr.R
#11
nlapier2
closed
5 months ago
1
Error in { : task 1 failed - "'length = 4' in coercion to 'logical(1)'" in ctwas_rss
#10
yuanzhongshang
closed
5 months ago
16
``ctwas_rss`` vignette error
#9
jokamoto97
closed
10 months ago
4
Fully parameterize by-chromosome functionality in `ctwas_rss` | `impute_expr_z` maybe also need small tweak to accomodate
#8
shugamoe
opened
10 months ago
1
Reading PredictDB Weights | Don't hardcode rsid as the SNP identifier
#7
shugamoe
opened
10 months ago
0
Add top1 workaround for improperly specified weight data
#6
shugamoe
closed
1 year ago
0
read_weight_fusion can now handle poorly specified wgt.matrix 'top1' …
#5
shugamoe
closed
1 year ago
0
When using FUSION weight files, ctwas reads the "top1" model differently than FUSION
#4
shugamoe
closed
1 year ago
8
".exprqc.Rd" file required
#3
Chunmingl
closed
1 year ago
3
Unclear error message
#2
ctggroup
closed
11 months ago
7
Simplified installation with `Remotes:` in DESCRIPTION
#1
pcarbo
closed
3 years ago
0