xinhe-lab ctwas issues - Githubissues

xinhe-lab / ctwas

package for the causal TWAS project

https://xinhe-lab.github.io/ctwas/

MIT License

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issues

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update tutorials

#40 kevinlkx closed 1 week ago
0
update purity cutoff and combining PIP calculation

#39 kevinlkx closed 1 week ago
0
update interface

#38 kevinlkx closed 2 weeks ago
0
fix issues with insufficient memory when using mclapply

#37 kevinlkx closed 3 weeks ago
0
fix link

#36 kevinlkx closed 4 weeks ago
0
update interface of snp_map, LD_map, and region_data data structure

#35 kevinlkx closed 4 weeks ago
0
About chromosome number Settings

#34 cauzhangjn opened 1 month ago
1
excluding genes with poor performance

#33 Takahiro0113 opened 1 month ago
1
Error in susie examples

#32 pcarbo closed 2 months ago
2
Fix variable bindings in use of dplyr and ggplot2 functions

#31 pcarbo closed 2 months ago
1
A few function arguments that are undocumented

#30 pcarbo closed 2 months ago
1
testthat test errors

#29 pcarbo closed 2 months ago
1
Use inherits to check class of object

#28 pcarbo closed 2 months ago
0
Remove help pages for non-exported functions

#27 pcarbo closed 2 months ago
1
Undefined functions

#26 pcarbo closed 2 months ago
4
Use of "aggregate" in sum_pip_across_contexts()

#25 pcarbo closed 2 months ago
1
Add imports for all functions called explicitly from other packages

#24 pcarbo closed 2 months ago
2
Miscellaneous improvements to ctwas

#23 pcarbo opened 2 months ago
4
Update No-LD version

#22 kevinlkx closed 3 months ago
0
Obtain NaN when estimating parameters

#21 MinghanQ opened 3 months ago
0
update preprocessing weights

#20 kevinlkx closed 3 months ago
0
Fine mapping with parameter estimation

#19 jgockley62 opened 4 months ago
8
add functions to convert genotype data to LD matrices

#18 kevinlkx closed 4 months ago
0
Questions about LD Reference file

#17 DoraCChen opened 4 months ago
6
Running genome-wide cTWAS with "ld_pgenfs=" option

#16 dhlee1013 closed 4 months ago
2
Question about SNP-gene correlation matrix

#15 Xinyu-Sun closed 6 months ago
2
`index_regions` function very slow

#14 seanjosephjurgens opened 6 months ago
1
updated tutorial for using cTWAS with summary statistics and package documentation

#13 kevinlkx closed 6 months ago
0
add min_abs_corr parameter to allow setting purity threshold

#12 kevinlkx closed 6 months ago
0
User option ignored in ctwas_impute_expr.R

#11 nlapier2 closed 5 months ago
1
Error in { : task 1 failed - "'length = 4' in coercion to 'logical(1)'" in ctwas_rss

#10 yuanzhongshang closed 5 months ago
16
``ctwas_rss`` vignette error

#9 jokamoto97 closed 10 months ago
4
Fully parameterize by-chromosome functionality in `ctwas_rss` | `impute_expr_z` maybe also need small tweak to accomodate

#8 shugamoe opened 10 months ago
1
Reading PredictDB Weights | Don't hardcode rsid as the SNP identifier

#7 shugamoe opened 10 months ago
0
Add top1 workaround for improperly specified weight data

#6 shugamoe closed 1 year ago
0
read_weight_fusion can now handle poorly specified wgt.matrix 'top1' …

#5 shugamoe closed 1 year ago
0
When using FUSION weight files, ctwas reads the "top1" model differently than FUSION

#4 shugamoe closed 1 year ago
8
".exprqc.Rd" file required

#3 Chunmingl closed 1 year ago
3
Unclear error message

#2 ctggroup closed 11 months ago
7
Simplified installation with `Remotes:` in DESCRIPTION

#1 pcarbo closed 3 years ago
0