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xinhe-lab / mapgen

R package to perform gene mapping using functionally-informed genetic fine mapping
https://xinhe-lab.github.io/mapgen/
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Some questions about installing MAPGEN #1

Closed HelloWorldLTY closed 1 year ago

HelloWorldLTY commented 1 year ago

Hi, sorry to disturb you. I intend to install mapgen, but received this error:

Error: Failed to install 'mapgen' from GitHub: no lines available in input

Could you please help me solve this problem? Thanks a lot.

kevinlkx commented 1 year ago

Thanks for your interest. I don't see those problems when installing mapgen from Github.

Which R version did you use? and did you install those other dependent packages?

HelloWorldLTY commented 1 year ago

Hi, many thanks for your reply. My R version is 4.1.3. Once I tried to install mapgen I met this problem, so I do not know if there are any extra packages I need. Thanks.

kevinlkx commented 1 year ago

Thanks for the information. Can you install these dependent R packages: tidyverse, data.table, bigsnpr, ggplot2, ggrepel, ggrastr, processx from CRAN, as well as GenomicRanges, plyranges, rtracklayer from Bioconductor? Then try install mapgen again

HelloWorldLTY commented 1 year ago

Hi, I have installed all of these packages but I still receive the same error. Even if I create a new environment, I still meet this problem.

kevinlkx commented 1 year ago

We have recently updated the package dependency and added some new functionality. It would be great if you can try to install again and see if this version (v0.3.12) works.