Parallel computing of the msisensor-pro baseline command does not work

[Schahrjar]

I tried to run the baseline command in parallel using this code:

msisensor-pro baseline -d msisensor-pro.list -i normal_configure.txt -o baseline -c 20 -b 4

But it returns this error:

failed to open output files to write ! malloc(): unsorted double linked list corrupted Segmentation fault (core dumped)

There are 25 sample BAM files in the configure. I use MSIsensor-pro in Ubuntu 20 on a 6-core machine. The command works fine without parallelisation:

msisensor-pro baseline -d msisensor-pro.list -i normal_configure.txt -o baseline -c 20

Thanks, Shahryar

[PengJia6]

I tried to run the baseline command in parallel using this code:

msisensor-pro baseline -d msisensor-pro.list -i normal_configure.txt -o baseline -c 20 -b 4

But it returns this error:

failed to open output files to write ! malloc(): unsorted double linked list corrupted Segmentation fault (core dumped)

There are 25 sample BAM files in the configure. I use MSIsensor-pro in Ubuntu 20 on a 6-core machine. The command works fine without parallelisation:

msisensor-pro baseline -d msisensor-pro.list -i normal_configure.txt -o baseline -c 20

Thanks, Shahryar

Hi Shahryar,

Thanks for responding to this bug! I will fix it as soon as possible!

Best, Peng Jia

[PengJia6]

@Schahrjar Please see v1.2.0 of msisensor-pro. This problem has been solved. Please contact me (pengjia@stu.xjtu.edu.cn) or open a new issue, if you have any other questions?

[bounlu]

Hi @PengJia6

Please see #64 related to this. Hope to get your suggestion.