Program aborted:Same reference genome file should be used in both 'scan' and msi/pro/baseline steps

Hello, When I use the docker to run msisensor-pro, at the baseline(for tumor only samples), the terminal shows:Program aborted:Same reference genome file should be used in both 'scan' and msi/pro/baseline steps. In the step of scan, I used GRCh38.d1.vd1.fa to generate reference.list.

=====here is full result===================================================================== Test with bam input baseline -d /data/reference/reference.list -i /data/data4baseline/baseline.bam.configure4docker -o /data/output/tumor_normal/tumor_only_bam Start at: Wed Mar 31 04:39:26 2021

Check for the environment ... Current work path: / Microsatellites file: /data/reference/reference.list Configure file path: /data/data4baseline/baseline.bam.configure4docker Output path:/data/output/tumor_normal/tumor_only_bam /data/output/tumor_normal/tumor_only_bam/ is existing! OK! /data/output/tumor_normal/tumor_only_bam/detail is existing! OK!

Load files ... /data/data4baseline/bamForTumorOnlyBaseLine/case1_normal_sorted.bam case1 /data/data4baseline/bamForTumorOnlyBaseLine/case1_normal_sorted.bam case1 load bam:/data/data4baseline/bamForTumorOnlyBaseLine/case1_normal_sorted.bam OK! /data/data4baseline/bamForTumorOnlyBaseLine/case2_normal_sorted.bam case2 /data/data4baseline/bamForTumorOnlyBaseLine/case2_normal_sorted.bam case2 load bam:/data/data4baseline/bamForTumorOnlyBaseLine/case2_normal_sorted.bam OK! /data/data4baseline/bamForTumorOnlyBaseLine/case3_normal_sorted.bam case3 /data/data4baseline/bamForTumorOnlyBaseLine/case3_normal_sorted.bam case3 load bam:/data/data4baseline/bamForTumorOnlyBaseLine/case3_normal_sorted.bam OK! Loading homopolymer and microsatellite sites ... Total loading windows: 7123 !OK Total loading homopolymer and microsatellites: 1806147 !OK

Process the 1 case : case1 /data/data4baseline/bamForTumorOnlyBaseLine/case1_normal_sorted.bam Process 1 case1 window: 0 done...:chr1:25453-524883 Process 1 case1 window: 1 done...:chr1:527455-1029320 Process 1 case1 window: 2 done...:chr1:1028590-1528958 Process 1 case1 window: 3 done...:chr1:1529828-2027833 Process 1 case1 window: 4 done...:chr1:2041044-2542469 Process 1 case1 window: 5 done...:chr1:2547807-3042997 Process 1 case1 window: 6 done...:chr1:3050534-3539696 Process 1 case1 window: 7 done...:chr1:3554158-4055367 Process 1 case1 window: 8 done...:chr1:4055250-4556668 Process 1 case1 window: 9 done...:chr1:4559995-5053554 Process 1 case1 window: 10 done...:chr1:5062293-5562861 Process 1 case1 window: 11 done...:chr1:5562358-6064030 Process 1 case1 window: 12 done...:chr1:6062409-6562714 Process 1 case1 window: 13 done...:chr1:6566563-7068418 Process 1 case1 window: 14 done...:chr1:7074662-7570620 Process 1 case1 window: 15 done...:chr1:7575000-8075874 Process 1 case1 window: 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done...:chr1:176921556-177416698 Process 1 case1 window: 315 done...:chr1:177424449-177920812 Process 1 case1 window: 316 done...:chr1:177930985-178431907 Process 1 case1 window: 317 done...:chr1:178432917-178934788 Process 1 case1 window: 318 done...:chr1:178936115-179438069 Process 1 case1 window: 319 done...:chr1:179437160-179938557 Process 1 case1 window: 320 done...:chr1:179937771-180436415 Process 1 case1 window: 321 done...:chr1:180438589-180935755 Process 1 case1 window: 322 done...:chr1:180939667-181440333 Process 1 case1 window: 323 done...:chr1:181439983-181939336 Process 1 case1 window: 324 done...:chr1:181942667-182444007 Process 1 case1 window: 325 done...:chr1:182442778-182944453 Process 1 case1 window: 326 done...:chr1:182943121-183443170 Process 1 case1 window: 327 done...:chr1:183446027-183944436 Process 1 case1 window: 328 done...:chr1:183946030-184447851 Process 1 case1 window: 329 done...:chr1:184448051-184949122 Process 1 case1 window: 330 done...:chr1:184948360-185447769 Process 1 case1 window: 331 done...:chr1:185453490-185945162 Process 1 case1 window: 332 done...:chr1:185953769-186455168 Process 1 case1 window: 333 done...:chr1:186454797-186956734 Process 1 case1 window: 334 done...:chr1:186954900-187453757 Process 1 case1 window: 335 done...:chr1:187456955-187956627 Process 1 case1 window: 336 done...:chr1:187962076-188455997 Process 1 case1 window: 337 done...:chr1:188463401-188951998 Process 1 case1 window: 338 done...:chr1:188965123-189466363 Process 1 case1 window: 339 done...:chr1:189465369-189966294 Process 1 case1 window: 340 done...:chr1:189966446-190467139 Process 1 case1 window: 341 done...:chr1:190467863-190967696 Process 1 case1 window: 342 done...:chr1:190969564-191463345 Process 1 case1 window: 343 done...:chr1:191473072-191969747 Process 1 case1 window: 344 done...:chr1:191973382-192473496 Process 1 case1 window: 345 done...:chr1:192473745-192974601 Process 1 case1 window: 346 done...:chr1:192974527-193475989 Process 1 case1 window: 347 done...:chr1:193483188-193982724 Process 1 case1 window: 348 done...:chr1:193984143-194484291 Process 1 case1 window: 349 done...:chr1:194484958-194982466 Process 1 case1 window: 350 done...:chr1:194985562-195487076 Process 1 case1 window: 351 done...:chr1:195495817-195995491 Process 1 case1 window: 352 done...:chr1:196005910-196504167 Process 1 case1 window: 353 done...:chr1:196507189-197009006 Process 1 case1 window: 354 done...:chr1:197008097-197508149 Process 1 case1 window: 355 done...:chr1:197508626-198007425 Process 1 case1 window: 356 done...:chr1:198010621-198510288 Process 1 case1 window: 357 done...:chr1:198512161-199012822 Process 1 case1 window: 358 done...:chr1:199017987-199511942 Process 1 case1 window: 359 done...:chr1:199521409-200022395 Process 1 case1 window: 360 done...:chr1:200022509-200524274 Process 1 case1 window: 361 done...:chr1:200522583-201021808 Process 1 case1 window: 362 done...:chr1:201025282-201524912 Process 1 case1 window: 363 done...:chr1:201525336-202027167 Process 1 case1 window: 364 done...:chr1:202025614-202527049 Process 1 case1 window: 365 done...:chr1:202527724-203029640 Process 1 case1 window: 366 done...:chr1:203030052-203529067 Process 1 case1 window: 367 done...:chr1:203531786-204033666 Process 1 case1 window: 368 done...:chr1:204032364-204532833 Process 1 case1 window: 369 done...:chr1:204532782-205032840 Process 1 case1 window: 370 done...:chr1:205034345-205533937 Process 1 case1 window: 371 done...:chr1:205534865-206030125 Process 1 case1 window: 372 done...:chr1:206035555-206536743 Process 1 case1 window: 373 done...:chr1:206542221-207044019 Process 1 case1 window: 374 done...:chr1:207044597-207544613 Process 1 case1 window: 375 done...:chr1:207544757-208046557 Process 1 case1 window: 376 done...:chr1:208045546-208546686 Process 1 case1 window: 377 done...:chr1:208561543-209062464 Process 1 case1 window: 378 done...:chr1:209063595-209565589 Process 1 case1 window: 379 done...:chr1:209567506-210066541 Process 1 case1 window: 380 done...:chr1:210069910-210570373 Process 1 case1 window: 381 done...:chr1:210576073-211075299 Process 1 case1 window: 382 done...:chr1:211076941-211572948 Process 1 case1 window: 383 done...:chr1:211581690-212079025 Process 1 case1 window: 384 done...:chr1:212083206-212581327 Process 1 case1 window: 385 done...:chr1:212584793-213085166 Process 1 case1 window: 386 done...:chr1:213084921-213584820 Process 1 case1 window: 387 done...:chr1:213587102-214085601 Process 1 case1 window: 388 done...:chr1:214087371-214585474 Process 1 case1 window: 389 done...:chr1:214588746-215089575 Process 1 case1 window: 390 done...:chr1:215088825-215588133 Process 1 case1 window: 391 done...:chr1:215590266-216091431 Process 1 case1 window: 392 done...:chr1:216091970-216593503 Process 1 case1 window: 393 done...:chr1:216592741-217094466 Process 1 case1 window: 394 done...:chr1:217092783-217592310 Process 1 case1 window: 395 done...:chr1:217594507-218093742 Process 1 case1 window: 396 done...:chr1:218101586-218603409 Process 1 case1 window: 397 done...:chr1:218602159-219101473 Process 1 case1 window: 398 done...:chr1:219105272-219605242 Process 1 case1 window: 399 done...:chr1:219606738-220107630 Process 1 case1 window: 400 done...:chr1:220107065-220606481 Process 1 case1 window: 401 done...:chr1:220611921-221113483 Process 1 case1 window: 402 done...:chr1:221114572-221616265 Process 1 case1 window: 403 done...:chr1:221618136-222119442 Process 1 case1 window: 404 done...:chr1:222119737-222609427 Process 1 case1 window: 405 done...:chr1:222620813-223120978 Process 1 case1 window: 406 done...:chr1:223123447-223624998 Process 1 case1 window: 407 done...:chr1:223623713-224124442 Process 1 case1 window: 408 done...:chr1:224124113-224617327 Process 1 case1 window: 409 done...:chr1:224624396-225124776 Process 1 case1 window: 410 done...:chr1:225129815-225631237 Process 1 case1 window: 411 done...:chr1:225630409-226131469 Process 1 case1 window: 412 done...:chr1:226130631-226631763 Process 1 case1 window: 413 done...:chr1:226631517-227131287 Process 1 case1 window: 414 done...:chr1:227132973-227630944 Process 1 case1 window: 415 done...:chr1:227633646-228131659 Process 1 case1 window: 416 done...:chr1:228136776-228636808 Process 1 case1 window: 417 done...:chr1:228636822-229137062 Process 1 case1 window: 418 done...:chr1:229139152-229640336 Process 1 case1 window: 419 done...:chr1:229640009-230139524 Process 1 case1 window: 420 done...:chr1:230140788-230641922 Process 1 case1 window: 421 done...:chr1:230644233-231145942 Process 1 case1 window: 422 done...:chr1:231151931-231647058 Process 1 case1 window: 423 done...:chr1:231652573-232151525 Process 1 case1 window: 424 done...:chr1:232154726-232655334 Process 1 case1 window: 425 done...:chr1:232655016-233156067 Process 1 case1 window: 426 done...:chr1:233155918-233656904 Process 1 case1 window: 427 done...:chr1:233656714-234156782 Process 1 case1 window: 428 done...:chr1:234158551-234657700 Process 1 case1 window: 429 done...:chr1:234662469-235163989 Process 1 case1 window: 430 done...:chr1:235164830-235666612 Process 1 case1 window: 431 done...:chr1:235665225-236165886 Process 1 case1 window: 432 done...:chr1:236165493-236666618 Process 1 case1 window: 433 done...:chr1:236666948-237168708 Process 1 case1 window: 434 done...:chr1:237168288-237669539 Process 1 case1 window: 435 done...:chr1:237670502-238170824 Process 1 case1 window: 436 done...:chr1:238175033-238672897 Process 1 case1 window: 437 done...:chr1:238679909-239181886 Process 1 case1 window: 438 done...:chr1:239180794-239681831 Process 1 case1 window: 439 done...:chr1:239681637-240181957 Process 1 case1 window: 440 done...:chr1:240181919-240683547 Process 1 case1 window: 441 done...:chr1:240682011-241183944 Process 1 case1 window: 442 done...:chr1:241185510-241684864 Process 1 case1 window: 443 done...:chr1:241686304-242187183 Process 1 case1 window: 444 done...:chr1:242187004-242686012 Process 1 case1 window: 445 done...:chr1:242687791-243185363 Process 1 case1 window: 446 done...:chr1:243188556-243690482 Process 1 case1 window: 447 done...:chr1:243688635-244187079 Process 1 case1 window: 448 done...:chr1:244189949-244691708 Process 1 case1 window: 449 done...:chr1:244692435-245192059 Process 1 case1 window: 450 done...:chr1:245193399-245691740 Process 1 case1 window: 451 done...:chr1:245698494-246197994 Process 1 case1 window: 452 done...:chr1:246201013-246702950 Process 1 case1 window: 453 done...:chr1:246701292-247198791 Process 1 case1 window: 454 done...:chr1:247204109-247702651 Process 1 case1 window: 455 done...:chr1:247709523-248211002 Process 1 case1 window: 456 done...:chr1:248210525-248711015 Process 1 case1 window: 457 done...:chr1:248713388-248944637 Program aborted: Same reference genome file should be used in both 'scan' and msi/pro/baseline steps!!!

xjtu-omics / msisensor-pro

Program aborted:Same reference genome file should be used in both 'scan' and msi/pro/baseline steps #25