Less than 200% cpu usage even set -b to 10

[xzhub]

I am using pengjia1110/msisensor-pro to analyze a pair of Tumor and Normal bam files. The command is :

docker run --cpus=10 -i --rm pengjia1110/msisensor-pro msisensor-pro msi -b 10 -d ... -n .. -t .. -e .. -o .. 

I only observed max ~150% cpu usage, and the speed is almost the same with -b 1, if not slower.

Is this normal? or if I did anything wrong? Thanks!

[PengJia6]

Hi,

It is normal, because not all steps are paralleled in MSIsensor-pro.

If you have many samples, you can run multipe samples with -b1 at same time.

Best, Peng

[xzhub]

Got it, thanks!