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xjtu-omics / msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.
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Baseline step for tumor-only pipeline #55

Open komalsrathi opened 1 year ago

komalsrathi commented 1 year ago

Hi,

We have 91 cram files that we need to run through the tumor-only pipeline. Should we run the baseline step with all the 91 files or randomly take a subset? Please let me know.

Thanks!

PengJia6 commented 1 year ago

I think maybe you could use all of these files.

ankurs103 commented 1 year ago

Do we need normal bams for baseline step? If yes, can you please share normal bams ?