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xjtu-omics / msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.
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Threshold TCGA #62

Open MirandaStobbe opened 1 year ago

MirandaStobbe commented 1 year ago

Hi,

I was wondering what threshold was used for the TCGA data shown in the article to determine which samples are MSI.

Thank you in advance!

Kind regards, Miranda

PengJia6 commented 12 months ago

In the article, we obtain this threshold by maximizing the Youden Index (true positive rate - false positive rate).