Hi
We analyzed the msi of a set of tumor-normal paired samples. The results are all above 40%, which are suspicious from experience. We used scan and msi steps.
We wonder if the reference.site need to be filtered with the capture region of the panel.
We noticed that the capture region was not used throughout the pipeline.
Hi We analyzed the msi of a set of tumor-normal paired samples. The results are all above 40%, which are suspicious from experience. We used scan and msi steps. We wonder if the reference.site need to be filtered with the capture region of the panel. We noticed that the capture region was not used throughout the pipeline.