search

xjtu-omics / msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Other
93 stars 20 forks source link

Why the default value is 1？ #8

Closed jsonProgram closed 4 years ago

jsonProgram commented 4 years ago

./msisensor_pro pro -h

. . -c coverage threshold for msi analysis, WXS: 20; WGS: 15, default=1 . . .

best, json

PengJia6 commented 4 years ago

./msisensor_pro pro -h

. . -c coverage threshold for msi analysis, WXS: 20; WGS: 15, default=1 . . .

best, json

Sorry for my late answer! This is a small bug, I used -c 1 to debug when developed the software, the default value should be 15. I will fix it in next realease. By the way, this parameter is just used to make sure enough reads coverd the analysis sites， and you can change it according to your sequencing coverage data, the 15 and 20 are just empirical value in our test.

best, Peng

PengJia6 commented 4 years ago

Hi, Json, @jsonProgram I have fixed this small bug and you can download the lastest binary file of msisensor-pro here. If you have any other question, please contact with me.