xlucpu / MOVICS

Multi-Omics integration and VIsualization in Cancer Subtyping
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Error: objects ‘rowSums’, ‘colSums’, ‘rowMeans’, ‘colMeans’ are not exported by 'namespace:BiocGenerics' Execution halted #13

Closed lu-kyo closed 10 months ago

lu-kyo commented 10 months ago

HI When I install MOVICS (devtools::install_github("xlucpu/MOVICS")), I get this problem Error: objects ‘rowSums’, ‘colSums’, ‘rowMeans’, ‘colMeans’ are not exported by 'namespace:BiocGenerics' Execution halted image

My biocgenerics version is 0.47.0 sessionInfo()

`R version 4.3.0 (2023-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.5 LTS

Matrix products: default BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so; LAPACK version 3.9.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

time zone: Asia/Shanghai tzcode source: system (glibc)

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] BiocGenerics_0.47.0

loaded via a namespace (and not attached): [1] miniUI_0.1.1.1 compiler_4.3.0 BiocManager_1.30.22 [4] crayon_1.5.2 promises_1.2.0.1 Rcpp_1.0.10
[7] stringr_1.5.0 callr_3.7.3 later_1.3.1
[10] fastmap_1.1.1 mime_0.12 R6_2.5.1
[13] curl_5.0.0 htmlwidgets_1.6.2 desc_1.4.2
[16] profvis_0.3.8 rprojroot_2.0.3 shiny_1.7.4
[19] rlang_1.1.1 cachem_1.0.8 stringi_1.7.12
[22] httpuv_1.6.11 fs_1.6.2 pkgload_1.3.2
[25] memoise_2.0.1 cli_3.6.1 withr_2.5.0
[28] magrittr_2.0.3 ps_1.7.5 digest_0.6.31
[31] processx_3.8.1 rstudioapi_0.14 xtable_1.8-4
[34] remotes_2.4.2 devtools_2.4.5 lifecycle_1.0.3
[37] prettyunits_1.1.1 vctrs_0.6.2 glue_1.6.2
[40] urlchecker_1.0.1 sessioninfo_1.2.2 pkgbuild_1.4.0
[43] purrr_1.0.1 usethis_2.1.6 tools_4.3.0
[46] ellipsis_0.3.2 htmltools_0.5.5 `

Hope you could help me fix it.

xlucpu commented 10 months ago

MOVICS was not tested to be installed in Linux system. Thus please find another operating system to install it.