Closed prvst closed 3 years ago
Hi, Sorry I just noticed your message. Currently, please install SNFtool independently from installing MOVICS. You can download the compressed file and install SNFtool locally (https://cran.r-project.org/src/contrib/Archive/SNFtool/), or use the following commond to install SNFtool in your R platform.
if (packageVersion("devtools") < 1.6) {
install.packages("devtools")
}
devtools::install_github("maxconway/SNFtool")
I will update MOVICS to solve this issue ASAP.
Thank you for this.
I have updated the MOVICS (0.99.14) and please check if it can be installed.
Hi. Thanks for replying. I tried installing SNFTool manually as you said, but unfortunately, that also fails, see below:
ERROR: dependency ‘heatmap.plus’ is not available for package ‘SNFtool’
Apparently, heatmap.plus is also deprecated and removed from CRAN.
Dependencies must by installed when you have to install a package manually which means you have to install "heatmap.plus" first. If this package has other dependencies, you have to install them one by one manually.
Anyway. I have updated MOVICS and please check if it can be installed now.
Sorry, still not able to install it.
ERROR: dependencies ‘SNFtool’, ‘ridge’ are not available for package ‘MOVICS
Also, the heatmap.plus package is not available anymore, not even in GitHub, so SNFTool cannot be installed.
I understand this situation.
In this manner MOVICS can be only installed given that you have heatmap.plus installed already. Therefore, please refer to https://cran.r-project.org/src/contrib/Archive/heatmap.plus/ and install heatmap.plus from local.
As for ridge package, please refer to ToubleShooting at the MOVICS main page. I summaried the solusion if you are using MacOS system.
Since MOVICS depends on a lot of external R package, I cannot make sure all these dependencies are constantly in maintain. Thus, the bottom line to get MOVICS installed is to make sure that you have all the dependencies installed.
Thanks. I had to go through a few other dependencies that are missing or not available, but after a couple of hours, I installed them.
Hi, I tried to install MOVICS but could not do it because one of the dependencies is now deprecated and not available for R's latest version.
Error: Failed to install 'MOVICS' from GitHub: (converted from warning) package ‘SNFtool’ is not available for this version of R
The package SNFtool was removed from CRAN.