search

xmao / kobas

KOBAS: a command line tool for identifying significant pathways from genomic data
http://kobas.cbi.pku.edu.cn
Other
30 stars 6 forks source link

KOBAS 3.0 web server is down #3

Open ahmadait opened 3 years ago

ahmadait commented 3 years ago

Dear xamao,

I was trying to reach and use KOBAS 3 webserver (http://kobas.cbi.pku.edu.cn/kobas3/?t=1) but the server is not responding. Would it be possible to look into this issue?

Thank you very much

Best Regards Ahmad

YanCCscu commented 2 years ago

I also encountered this problem times, and it's a good idea to install and run it in local computer. conda can be used to create the environment it required. However, I also found that there may be some problem for its default statistical test method. As I found pvalues from hypergeometric test and Fisher's exact test are a bit different (they should be same). I think the four parameters for fisher.test: (m1, n1 - m1, m2, n2 - m2) in Line 176 of the discover module should be (m1, n1 - m1, m2-m1, n2 - n1-(m2-m1). I am not sure whether it is right, the author may help to make it out?

binmao commented 2 years ago

I have got the message ,thank you!     您发给我的信件已经收到。