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xmlyqing00 / Cholmod-Scikit-Sparse-Windows

Set up cholmod and scikit-sparse python package on Windows.
GNU General Public License v3.0
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compile error #5

Closed tuanhui-li closed 3 years ago

tuanhui-li commented 3 years ago 
Collecting scikit-sparse==0.4.4
  Using cached scikit-sparse-0.4.4.tar.gz (385 kB)
Requirement already satisfied: numpy in d:\application\anaconda\lib\site-packages (from scikit-sparse==0.4.4) (1.17.4)
Requirement already satisfied: scipy in d:\application\anaconda\lib\site-packages (from scikit-sparse==0.4.4) (1.4.1)
Building wheels for collected packages: scikit-sparse
  Building wheel for scikit-sparse (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: 'D:\application\anaconda\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Administrator\\AppData\\Local\\T
emp\\pip-install-alf6p0oh\\scikit-sparse\\setup.py'"'"'; __file__='"'"'C:\\Users\\Administrator\\AppData\\Local\\Temp\\pip-install-alf6p0oh\\scikit-spar
se\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, _
_file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\Administrator\AppData\Local\Temp\pip-wheel-bohc3p8n'
       cwd: C:\Users\Administrator\AppData\Local\Temp\pip-install-alf6p0oh\scikit-sparse\
  Complete output (31 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build\lib.win-amd64-3.7
  creating build\lib.win-amd64-3.7\sksparse
  copying sksparse\test_cholmod.py -> build\lib.win-amd64-3.7\sksparse
  copying sksparse\_version.py -> build\lib.win-amd64-3.7\sksparse
  copying sksparse\__init__.py -> build\lib.win-amd64-3.7\sksparse
  creating build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\illc1033.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\illc1033_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\illc1850.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\illc1850_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\well1033.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\well1033_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\well1850.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  copying sksparse\test_data\well1850_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
  UPDATING build\lib.win-amd64-3.7\sksparse/_version.py
  set build\lib.win-amd64-3.7\sksparse/_version.py to '0.4.4'
  running build_ext
  skipping 'sksparse\cholmod.c' Cython extension (up-to-date)
  building 'sksparse.cholmod' extension
  creating build\temp.win-amd64-3.7
  creating build\temp.win-amd64-3.7\Release
  creating build\temp.win-amd64-3.7\Release\sksparse
  C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -ID:\application\anaconda\lib\site-pac
kages\numpy\core\include -ID:\application\anaconda/include -I/usr/include/suitesparse -ID:\application\anaconda\include -ID:\application\anaconda\includ
e "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program
Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\w
inrt" /Tcsksparse\cholmod.c /Fobuild\temp.win-amd64-3.7\Release\sksparse\cholmod.obj
  cholmod.c
  d:\application\anaconda\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it
with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
  c:\users\administrator\appdata\local\temp\pip-install-alf6p0oh\scikit-sparse\sksparse\cholmod_backward_compatible.h(1): fatal error C1083: Cannot open
 include file: 'cholmod.h': No such file or directory
  error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2
  ----------------------------------------
  ERROR: Failed building wheel for scikit-sparse
  Running setup.py clean for scikit-sparse
Failed to build scikit-sparse
Installing collected packages: scikit-sparse
    Running setup.py install for scikit-sparse ... error
    ERROR: Command errored out with exit status 1:
     command: 'D:\application\anaconda\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Administrator\\AppData\\Local\
\Temp\\pip-install-alf6p0oh\\scikit-sparse\\setup.py'"'"'; __file__='"'"'C:\\Users\\Administrator\\AppData\\Local\\Temp\\pip-install-alf6p0oh\\scikit-sp
arse\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code,
 __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Administrator\AppData\Local\Temp\pip-record-_sskybiz\install-record.txt' --single-version-extern
ally-managed --compile --install-headers 'D:\application\anaconda\Include\scikit-sparse'
         cwd: C:\Users\Administrator\AppData\Local\Temp\pip-install-alf6p0oh\scikit-sparse\
    Complete output (31 lines):
    running install
    running build
    running build_py
    creating build
    creating build\lib.win-amd64-3.7
    creating build\lib.win-amd64-3.7\sksparse
    copying sksparse\test_cholmod.py -> build\lib.win-amd64-3.7\sksparse
    copying sksparse\_version.py -> build\lib.win-amd64-3.7\sksparse
    copying sksparse\__init__.py -> build\lib.win-amd64-3.7\sksparse
    creating build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\illc1033.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\illc1033_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\illc1850.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\illc1850_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\well1033.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\well1033_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\well1850.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    copying sksparse\test_data\well1850_rhs1.mtx.gz -> build\lib.win-amd64-3.7\sksparse\test_data
    UPDATING build\lib.win-amd64-3.7\sksparse/_version.py
    set build\lib.win-amd64-3.7\sksparse/_version.py to '0.4.4'
    running build_ext
    skipping 'sksparse\cholmod.c' Cython extension (up-to-date)
    building 'sksparse.cholmod' extension
    creating build\temp.win-amd64-3.7
    creating build\temp.win-amd64-3.7\Release
    creating build\temp.win-amd64-3.7\Release\sksparse
    C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -ID:\application\anaconda\lib\site-p
ackages\numpy\core\include -ID:\application\anaconda/include -I/usr/include/suitesparse -ID:\application\anaconda\include -ID:\application\anaconda\incl
ude "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Progra
m Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include
\winrt" /Tcsksparse\cholmod.c /Fobuild\temp.win-amd64-3.7\Release\sksparse\cholmod.obj
    cholmod.c
    d:\application\anaconda\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable i
t with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
    c:\users\administrator\appdata\local\temp\pip-install-alf6p0oh\scikit-sparse\sksparse\cholmod_backward_compatible.h(1): fatal error C1083: Cannot op
en include file: 'cholmod.h': No such file or directory
    error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2
    ----------------------------------------
ERROR: Command errored out with exit status 1: 'D:\application\anaconda\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\User
s\\Administrator\\AppData\\Local\\Temp\\pip-install-alf6p0oh\\scikit-sparse\\setup.py'"'"'; __file__='"'"'C:\\Users\\Administrator\\AppData\\Local\\Temp
\\pip-install-alf6p0oh\\scikit-sparse\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"
'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Administrator\AppData\Local\Temp\pip-record-_sskybiz\install-re
cord.txt' --single-version-externally-managed --compile --install-headers 'D:\application\anaconda\Include\scikit-sparse' Check the logs for full comman
d output.

when I use pip install then I got the error, can you help me ? Thanks !

xmlyqing00 commented 3 years ago

This line says the error " include file: 'cholmod.h': No such file or directory". It seems this is a link problem. I guess you can check system PATH in the system environment.

xmlyqing00 commented 3 years ago

@tuanhui-li I got your problem now.

You seemed to replace scikit-sparse with the 0.4.4 version. In the original 0.4.3 version, I modified the setup.py to let it can find the corresponding headers and libraries. You should also modify the setup.py too.

Now, I have upgraded my scikit-sparse version from 0.4.3 to 0.4.4 in the master branch. You can just simply download the new codes then install it.

xmlyqing00 commented 3 years ago

If you have any further problems. Feel free to reopen the issue or start a new issue.