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xomicsdatascience / transcriptome-proteome-nas-manubot

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mapping the predicted proteome to mass-spec data #11

Open animesh opened 4 months ago

animesh commented 4 months ago

is there mass-spec data in cptac? otherwise https://www.ebi.ac.uk/pride/archive?keyword=cancer has a lot and probably a good thing to combine with?

jessegmeyerlab commented 4 months ago

Thanks for your comment. The proteomics data in CPTAC is derived from mass spectrometry. Could you please clarify the direction you are suggesting?

animesh commented 4 months ago

i am thinking if we can use the rna-seq data to produce the specific proteome and then map the mass-spec data to that?