Related works- JIPipe,SoS,PolyJus

[Max-ChenFei]

• JIPipe: visual batch processing for ImageJ. Nat Methods https://www.nature.com/articles/s41592-022-01744-4 https://github.com/applied-systems-biology/jipipe

[Max-ChenFei]

https://github.com/twosigma/beakerx including java cell @xp1632, but it is a liitle old.

[Max-ChenFei]

Jupyter Notebook for ImageJ https://forum.image.sc/t/jupyter-notebook-for-imagej/5421

[Max-ChenFei]

Polyglot:

1. SOS Notebook
2. PolyJus
3. nextioumal
4. Databrickes
5. Beakers
6. nteract

...reference: The Design Space of Computational Notebooks: An Analysis of 60 Systems in Academia and Industry

[xp1632]

ImageJ based on python interpreter as a base line for evaluation

https://imagej.net/scripting/pyimagej https://www.nature.com/articles/s41592-022-01655-4

[xp1632]

Paper Summary List

1. JIPipe: visual batch processing for ImageJ link

• no manually loop for batch processing, automatically built-in loop
• visual node as substitute of marco language in ImageJ
• bridge the gap between experimentalist and computer scientist

2. SoS Notebook: an interactive multi-language data analysis environment

• shared variables and cell outputs between subkernels based on 'magics' % command

• explicit and automatically (%with, %use) kernel switch

• data structure transfer to Python for multi-languages

• side bar preview of data from any kernel

• Drawbacks mentioned by [3]:

  • each code cell has to import and export data and intermediate results
  • because each cell is executed in its own language-specific execution environment (notebook kernel)
  • No shared reference of the same object between different kernels

3. PolyJuS: A Squeak/Smalltalk-based Polyglot Notebook System for the GraalVM

- Feature:

• support live object inspection by smalltalk based jupyter-like notebook system
• support polyglot execution by GraalVM virtual machine env's API
• support sharing object reference between languages by key-value pair namespace

- Drawback:

• runs on a single machine
• not with existing web-based notebook UI and remote kernel architecture