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xp3i4 / linear

Framework of alignment-free method for variants detection.
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Errors during SV calling #1

Open Flooooooooooooower opened 2 months ago

Flooooooooooooower commented 2 months ago

Dear professor,

Thank you for creating such a great software. I have a question that I would like to consult with you. I am using the workflow you suggested. After linear filter alignment, errors appeared when using SVIM and cuteSV. Specifically, with SVIM, I only got the "all.vcf" in the signatures, and with cuteSV, I only obtained an empty VCF. Is it possible that I made a mistake during the linear filter process? Could you create a Docker container and upload it to Docker Hub? Thank you.

Best regards, Flooooooooooooower

Flooooooooooooower commented 1 month ago

I found that the generated SAM information only contains the ID information but does not have the corresponding sequence information. Where might the error be?