ValueError: could not convert string to float: '90,90,90'

[qianxin-kxy]

A very useful tool, but I encountered the following problem during the use process and don't know how to handle it

Code used: $ bacant --indir /data/users/kxytry/infile -o outdir

Error prompt Traceback (most recent call last): File "/data/users/kxy/miniconda3/envs/bacant/bin/bacant", line 33, in sys.exit(load_entry_point('BacAnt==3.3.2', 'console_scripts', 'bacant')()) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 1135, in run process_dir(blastn_path,indir,resultdir) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 881, in process_dir ident0 = float(ident0) ValueError: could not convert string to float: '90,90,90'

[xthua]

hi,

please update bacant to 3.4.0

conda install -c bacant -c conda-forge -c bioconda bacant=3.4.0

-----原始邮件----- 发件人:qianxin-kxy @.> 发送时间:2023-06-05 16:20:24 (星期一) 收件人: xthua/bacant @.> 抄送: Subscribed @.***> 主题: [xthua/bacant] ValueError: could not convert string to float: '90,90,90' (Issue #8)

A very useful tool, but I encountered the following problem during the use process and don't know how to handle it

Code used: $ bacant --indir /data/users/kxytry/infile -o outdir

Error prompt Traceback (most recent call last): File "/data/users/kxy/miniconda3/envs/bacant/bin/bacant", line 33, in sys.exit(load_entry_point('BacAnt==3.3.2', 'console_scripts', 'bacant')()) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 1135, in run process_dir(blastn_path,indir,resultdir) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 881, in process_dir ident0 = float(ident0) ValueError: could not convert string to float: '90,90,90'

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

Xiaoting Hua, PhD, Associate Professor Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Qingchundong 3 RD, Hangzhou 310016, China

[qianxin-kxy]

hi, please update bacant to 3.4.0 conda install -c bacant -c conda-forge -c bioconda bacant=3.4.0 … -----原始邮件----- 发件人:qianxin-kxy @.> 发送时间:2023-06-05 16:20:24 (星期一) 收件人: xthua/bacant @.> 抄送: Subscribed @.> 主题: [xthua/bacant] ValueError: could not convert string to float: '90,90,90' (Issue #8) A very useful tool, but I encountered the following problem during the use process and don't know how to handle it Code used: $ bacant --indir /data/users/kxytry/infile -o outdir Error prompt Traceback (most recent call last): File "/data/users/kxy/miniconda3/envs/bacant/bin/bacant", line 33, in sys.exit(load_entry_point('BacAnt==3.3.2', 'console_scripts', 'bacant')()) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 1135, in run process_dir(blastn_path,indir,resultdir) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 881, in process_dir ident0 = float(ident0) ValueError: could not convert string to float: '90,90,90' — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.> Xiaoting Hua, PhD, Associate Professor Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Qingchundong 3 RD, Hangzhou 310016, China

Thank you for your reply, but the problem still exists

This is the entire process of code execution

(bacant) [kxy@zju ~]$ conda install -c bacant -c conda-forge -c bioconda bacant=3.4.0 Collecting package metadata (current_repodata.json): done Solving environment: - Warning: >10 possible package resolutions (only showing differing packages):

• https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64::perl-list-moreutils-0.15-pl5.22.0_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::bzip2-1.0.8-h7f98852_4, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::gmp-6.1.2-hf484d3e_1000, https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64::libboost-1.67.0-h46d08c1_4
• https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64::perl-list-moreutils-0.15-pl5.22.0_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::gmp-6.1.2-hf484d3e_1000, https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64::libboost-1.67.0-h46d08c1_4, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::bzip2-1.0.8-h7f98852_4 ... and othedone

==> WARNING: A newer version of conda exists. <== current version: 23.3.1 latest version: 23.5.0

Please update conda by running

$ conda update -n base -c https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge conda

Or to minimize the number of packages updated during conda update use

 conda install conda=23.5.0

Package Plan

environment location: /data/users/kxy/miniconda3/envs/bacant

added / updated specs:

• bacant=3.4.0

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
ca-certificates-2023.5.7   |       hbcca054_0         145 KB  conda-forge
openssl-1.1.1u             |       hd590300_0         1.9 MB  conda-forge
------------------------------------------------------------
                                       Total:         2.0 MB

The following packages will be SUPERSEDED by a higher-priority channel:

ca-certificates anaconda/cloud/conda-forge --> conda-forge openssl anaconda/cloud/conda-forge --> conda-forge

Proceed ([y]/n)? y

Downloading and Extracting Packages

Preparing transaction: done
Verifying transaction: done Executing transaction: done (bacant) [kxy@zju ~]$ cd /data/users/kxy/kxytry/assembleddata/analysis/transposon_1 (bacant) [kxy@zju transposon_1]$ bacant --indir /data/users/kxy/kxytry/assembleddata/tog/infile -o outdir Traceback (most recent call last): File "/data/users/kxy/miniconda3/envs/bacant/bin/bacant", line 33, in sys.exit(load_entry_point('BacAnt==3.3.2', 'console_scripts', 'bacant')()) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 1135, in run process_dir(blastn_path,indir,resultdir) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 881, in process_dir ident0 = float(ident0) ValueError: could not convert string to float: '90,90,90'(bacant)

In addition, I have also tried other code, such as the one shown below, but it cannot be successfully run (bacant) [kxy@zju transposon_1]$ bacant -n FASTA --indir data/users/kxy/kxytry/assembleddata/tog/infile --identities 80,80,80 --resultdir RESULTDIR Traceback (most recent call last): File "/data/users/kxy/miniconda3/envs/bacant/bin/bacant", line 33, in sys.exit(load_entry_point('BacAnt==3.3.2', 'console_scripts', 'bacant')()) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 1135, in run process_dir(blastn_path,indir,resultdir) File "/data/users/kxy/miniconda3/envs/bacant/lib/python3.7/site-packages/BacAnt-3.3.2-py3.7.egg/BacAnt/bacant.py", line 881, in process_dir ident0 = float(ident0) ValueError: could not convert string to float: '80,80,80'