xtonyjiang / GNOVA

A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
http://www.cell.com/ajhg/abstract/S0002-9297(17)30453-6
GNU General Public License v3.0
26 stars 13 forks source link

Problem preparing files for gnova #6

Open frotsko opened 4 years ago

frotsko commented 4 years ago

Hi,

I am having this error repeteadly, even when I have formatted files according to readme specifications. Could you help me with this issue? Thanks!

Preparing files for analysis... Traceback (most recent call last): File "./gnova.py", line 85, in pipeline(parser.parse_args()) File "./gnova.py", line 34, in pipeline args.sumstats2) File "/Users/usuario/Desktop/pipeline/prep.py", line 67, in prep len_b, len_a = len(bim_files), len(annot_files) TypeError: object of type 'NoneType' has no len()