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xu-lab / SINCERA

An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
https://research.cchmc.org/pbge/sincera.html
GNU General Public License v3.0
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Unable to filterLowQualityCells #7

Open YingMa0107 opened 6 years ago

YingMa0107 commented 6 years ago

I just follow the code you post for the data("E16.5"). And when I try to run sc <- filterLowQualityCells(sc, min.expression=1, min.genes=1000, do.plot=T) It showed error as below: Error in ret[genes, cells] : incorrect number of dimensions

Could you please tell me how to solve this problem?

minzheguo commented 6 years ago

Hi @YingMa1993 , sorry for replying late. The problem was because of the incorrect calling of the exprs function newly introduced by the dplyr package. I have updated the code to fix the issue. Please have a try and let me know if there are any problems. Thank you!