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xuechantian / Plant-LncRNA-pipline

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lncRNA.gtf no result #1

Open Qikiiso opened 1 month ago

Qikiiso commented 1 month ago

Hello,All i am trying to use Plant-LncRNA-pipline to identify lncRNAs in plants. But when i run (grep -Fwf final_lncRNA_results.txt candidate_transcript.gtf > lncRNA.gtf) this command, there is no result in the lncRNA.gtf file.

When i checked final_lncRNA_results.txt, I found information about the candidate ID available at candidate_transcript.gtf.

This is my final_lncRNA_results.txt 1716551526657

This is my candidate_transcript.gtf 1716551769660

Could you tell me how to solve this problem?

Thank you in advance for your time and assistance. I look forward to your valuable insights.

xuechantian commented 1 month ago

 Hello, can you send me these two files, I will run this command to check. I'm guessing there might be hidden characters in the file.     ------------------ Original ------------------ From: @.>; Date:  Fri, May 24, 2024 07:56 PM To: @.>; Cc: @.***>; Subject:  [xuechantian/Plant-LncRNA-pipline] lncRNA.gtf no result (Issue #1)

 

Hello,All i am trying to use Plant-LncRNA-pipline to identify lncRNAs in plants. But when i run (grep -Fwf final_lncRNA_results.txt candidate_transcript.gtf > lncRNA.gtf) this command, there is no result in the lncRNA.gtf file.

When i checked final_lncRNA_results.txt, I found information about the candidate ID available at candidate_transcript.gtf.

This is my final_lncRNA_results.txt 1716551526657.png (view on web)

This is my candidate_transcript.gtf 1716551769660.jpg (view on web)

Could you tell me how to solve this problem?

Thank you in advance for your time and assistance. I look forward to your valuable insights.

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