search

xuechantian / Plant-LncRNA-pipline

9 stars 5 forks source link

A question about the input file ？ #4

Open zhangwenda0518 opened 2 weeks ago

zhangwenda0518 commented 2 weeks ago

Hello, I am using the software in my non-model species data. I want to ask how to obtain two files, training_mRNA.fasta and training_lncRNA.fasta, in this step. Is it a file that directly applies example_data?

mRNA <- seqinr::read.fasta(file ="example_data/**training_mRNA.fasta**")
lncRNA <- seqinr::read.fasta(file ="example_data/**training_lncRNA.fasta**")

thanks！

xuechantian commented 2 weeks ago

Hello, training_mRNA.fasta and training_lncRNA.fasta are training set files used to extract features and cannot be replaced. It is located in https://github.com/xuechantian/Plant-LncRNA-pipline/tree/master/example_data, will be able to download. They can also be done through the command git clone https://github.com/xuechantian/Plant-LncRNA-pipline.git     ------------------ Original ------------------ From: @.>; Date:  Wed, Jun 26, 2024 02:54 PM To: @.>; Cc: @.***>; Subject:  [xuechantian/Plant-LncRNA-pipline] A question about the input file ？ (Issue #4)

 

Hello, I am using the software in my non-model species data. I want to ask how to obtain two files, training_mRNA.fasta and training_lncRNA.fasta, in this step. Is it a file that directly applies example_data? mRNA <- seqinr::read.fasta(file ="example_data/training_mRNA.fasta") lncRNA <- seqinr::read.fasta(file ="example_data/training_lncRNA.fasta")
thanks！

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

zhangwenda0518 commented 2 weeks ago

OK，I konw how to do！ Thanks！