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xuechunxu / DiTing

DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
GNU General Public License v3.0
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Error for visualize the abundance table using my own combination of samples #23

Open laibinhuang opened 1 year ago

laibinhuang commented 1 year ago

Dear Xue,

thank you for your program here, I would like to discuss a recent issue I have met:

I group my samples in pathways_relative_abundance.tab, but it produces the error when I use:

"/home/lbhuang/miniconda3/envs/diting-env/bin/diting.py" -vis "/home/lbhuang/Moore/Diting/results/pathways_relative_abundance-C.tab"

if there anyway, I can change the editing code that can use a mapping file to do this?

Thank you very much

INFO:root:Visualize abundance table Traceback (most recent call last): File "/home/lbhuang/miniconda3/envs/diting-env/bin/diting.py", line 259, in main() File "/home/lbhuang/miniconda3/envs/diting-env/bin/diting.py", line 13, in main sketch(ABUNDANCE_TABLE) File "/home/lbhuang/miniconda3/envs/diting-env/bin/scripts/sketch.py", line 22, in sketch os.mkdir('Figure_tmp') FileExistsError: [Errno 17] File exists: 'Figure_tmp'

microfafa-gh commented 8 months ago

I was encountering the same issue, I don’t know if there’s a better fix but before running the code I ran these two lines: rm-rf Figure_tmp and rm -rf heatmap_tmp Basically manually deleting the previously existing temporary folders. Hope it helps!