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xulabs / aitom

AI for tomography
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Simple alignment based iterative subtomogram averaging #4

Open xulabs opened 5 years ago

xulabs commented 5 years ago

to be added to aitom.average.align.simple_iterative.average

xulabs commented 5 years ago

Example code can be found at aitom/tomominer/average/genetic_algorithm/aligned_refine aitom/tomominer/pursuit/multi/util.vol_avg__local

https://github.com/alberlab/tomominer/blob/master/bin/tm_average

To fully utilize all cpu cores, need to be parallelized using multiprocessing A wrapper function can be found here: aitom.parallel.multiprocessing.util

xiangruz commented 4 years ago

Alignment based classification

xulabs commented 4 years ago

Alignment based classification method, see following paper

Xu M, Beck M, Alber F. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching. Journal of Structural Biology. 2012 May;178(2):152-64. Epub 2012 Mar 7.