Open Biojenifer opened 2 years ago
Hi,
Yes, if the running is successful, you could remove the entire temp folder.
The first error may be due to some format issue, such as empty temp files. it is about the detection of integration breakpoints. You could check ".out3" files in the temp files
It seems like the second error is due to an empty output, it should be about the R script used for the genotyping. Could you share a bit more details about the input?
btw, I would suggest using the latest version rather than 1.3.
Xun
Hi!
Although I am getting a vcf with HERV-K insertions after running ERVcaller with some bam files (sorted by coordinate and with duplicates marked), I still have the
sampleID_temp
directory. Shouldn't this directory be erased when the program finishes?In addition, I have been looking the logs and I get some errors in different samples:
One of the errors is this:
In another sample, I get this error:
Do you know how can I solve this?
By the way, I am still getting the output vcf in these samples, so I was wondering if maybe I could ignore it.
Thanks!