ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation sequencing (NGS) data. We evaluated the tools using both simulated and real benchmark whole-genome sequencing (WGS) datasets. ERVcaller is capable to accurately detect various TE insertions of any lengths, particularly ERVs. It allows for the use of a TE reference library regardless of sequence complexity, such as the entire RepBase database. It is easy to install and use with command lines.
When -w was specified, I added "use warnings;" if it wasn't already there. Also set the executable bits. This will allow the scripts to be called from the command line without prefixing them with "perl".
Changed ...
!usr/bin/env perl
... and ...
!usr/bin/perl
... lines to ...
!/usr/bin/env perl
When -w was specified, I added "use warnings;" if it wasn't already there. Also set the executable bits. This will allow the scripts to be called from the command line without prefixing them with "perl".