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xunchen85 / VIcaller

A software to detect virome-wide integrations
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What is input file of calculate? #3

Closed byeonggill closed 5 years ago

byeonggill commented 5 years ago

calculate parameter image

What is input file of calculate? I don't know what to do with parameter -F inputID_h.bam? inputID_h1.sort.bam?

and, Is the parameter -N the column No._reads_supporting_VI?

xunchen85 commented 5 years ago

The input is actually the same as the detect function "-f", which can be fastq or bam format. it is unclear before, i have revise the script to directly use "inputID_h.bam" if the original input file is fastq format.

It is correct that -N is the column No._reads_supporting_VI.