music_prop function is wrong

[herong2006]

GSE50244.bulk.eset = readRDS('GSE50244bulkeset.rds') GSE50244.bulk.eset bulk.mtx = exprs(GSE50244.bulk.eset) bulk.meta = exprs(GSE50244.bulk.eset)

EMTAB.sce = readRDS('EMTABsce_healthy.rds') EMTAB.sce

XinT2D.sce = readRDS('XinT2Dsce.rds') XinT2D.sce

Bulk expression matrix

bulk.mtx = exprs(GSE50244.bulk.eset)

Estimate cell type proportions

Est.prop.GSE50244 = music_prop(bulk.mtx = bulk.mtx, sc.eset = EMTAB.sce, clusters = 'cellType', samples = 'sampleID', select.ct = c('alpha', 'beta', 'delta', 'gamma', 'acinar', 'ductal'), verbose = F) run with error:

Est.prop.GSE50244 = music_prop(bulk.mtx = bulk.mtx, sc.eset = EMTAB.sce, clusters = 'cellType',

• samples = 'sampleID', select.ct = c('alpha', 'beta', 'delta', 'gamma',
• 'acinar', 'ductal'), verbose = F) _Error in musicbasis(sc.sce, non.zero = TRUE, markers = sc.markers, clusters = clusters, : argument "sc.sce" is missing, with no default

[FrankStarling]

I have also encountered this problem as well and created a separate issue #111. Would appreciate any suggestions if you ever found a solution.