Warning message in i.p(...):
“installation of package ‘Matrix’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘rlang’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘cli’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘farver’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘isoband’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘MatrixModels’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘lifecycle’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘vctrs’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘quantreg’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘tibble’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘MCMCpack’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘ggplot2’ had non-zero exit status”
✔ checking for file ‘/private/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T/Rtmpma5EHU/remotes129a54a8e32c1/xuranw-MuSiC-0a3e3af/DESCRIPTION’
─ preparing ‘MuSiC’:
✔ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘MuSiC_1.0.0.tar.gz’
Warning message in i.p(...):
“installation of package ‘/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T//Rtmpma5EHU/file129a55b1c892d/MuSiC_1.0.0.tar.gz’ had non-zero exit status”
And then, library(MuSiC) does not work. It seems that all these updates fail because they need R>4.0
Here is the error :
Downloading GitHub repo xuranw/MuSiC@HEAD
MatrixModels (0.5-0 -> 0.5-1) [CRAN] rlang (1.0.2 -> 1.0.6) [CRAN] lifecycle (1.0.1 -> 1.0.3) [CRAN] cli (3.3.0 -> 3.4.1) [CRAN] vctrs (0.4.1 -> 0.5.0) [CRAN] farver (2.1.0 -> 2.1.1) [CRAN] quantreg (5.93 -> 5.94 ) [CRAN] tibble (3.1.7 -> 3.1.8) [CRAN] isoband (0.2.5 -> 0.2.6) [CRAN] MCMCpack (1.4-8 -> 1.6-3) [CRAN] ggplot2 (3.3.6 -> 3.4.0) [CRAN] Skipping 3 packages not available: SingleCellExperiment, Biobase, TOAST
Installing 12 packages: MatrixModels, rlang, lifecycle, cli, vctrs, farver, quantreg, tibble, isoband, MCMCpack, TOAST, ggplot2
Warning message: “package ‘TOAST’ is not available (for R version 3.6.3)” also installing the dependency ‘Matrix’
There are binary versions available but the source versions are later: binary source needs_compilation Matrix 1.3-4 1.5-1 TRUE MatrixModels 0.5-0 0.5-1 FALSE rlang 1.0.1 1.0.6 TRUE lifecycle 1.0.1 1.0.3 FALSE cli 3.1.1 3.4.1 TRUE vctrs 0.3.8 0.5.0 TRUE farver 2.1.0 2.1.1 TRUE quantreg 5.85 5.94 TRUE tibble 3.1.6 3.1.8 TRUE isoband 0.2.5 0.2.6 TRUE MCMCpack 1.6-0 1.6-3 TRUE ggplot2 3.3.5 3.4.0 FALSE
installing the source packages ‘Matrix’, ‘MatrixModels’, ‘rlang’, ‘lifecycle’, ‘cli’, ‘vctrs’, ‘farver’, ‘quantreg’, ‘tibble’, ‘isoband’, ‘MCMCpack’, ‘ggplot2’
Warning message in i.p(...): “installation of package ‘Matrix’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘rlang’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘cli’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘farver’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘isoband’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘MatrixModels’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘lifecycle’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘vctrs’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘quantreg’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘tibble’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘MCMCpack’ had non-zero exit status” Warning message in i.p(...): “installation of package ‘ggplot2’ had non-zero exit status” ✔ checking for file ‘/private/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T/Rtmpma5EHU/remotes129a54a8e32c1/xuranw-MuSiC-0a3e3af/DESCRIPTION’ ─ preparing ‘MuSiC’: ✔ checking DESCRIPTION meta-information ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘MuSiC_1.0.0.tar.gz’
Warning message in i.p(...): “installation of package ‘/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T//Rtmpma5EHU/file129a55b1c892d/MuSiC_1.0.0.tar.gz’ had non-zero exit status”
And then, library(MuSiC) does not work. It seems that all these updates fail because they need R>4.0
Thanks in advance,
Alexandre Coudray PhD student at EPFL. Lausanne