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xuranw / MuSiC

Multi-subject Single Cell Deconvolution
https://github.com/xuranw/MuSiC
GNU General Public License v3.0
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Expression set not recognized and MuSiC version 1 and version 2 incompatible #113

Open hasanalanya opened 1 year ago

hasanalanya commented 1 year ago

Hi there,

MuSiC deconvolution method does not recognize the expression set and gives "bulk.mtx is missing, with no default" error.

In addition, I followed up the installation of the MuSiC2 from the tutorial and seems like there is no package called MuSiC2. So, MuSiC and MuSiC2 are incompatible. 

# install devtools if necessary
if (!"devtools" %in% rownames(installed.packages())) {
  install.packages('devtools')
}
# install the MuSiC2 package
if (!"MuSiC2" %in% rownames(installed.packages())) {
  devtools::install_github('Jiaxin-Fan/MuSiC2')
}
# load
library(MuSiC2)

Error in library(MuSiC2) : there is no package called ‘MuSiC2’

The MuSiC deconvolution method is not stable and needs maintenance.

I would appreciate it if you can fix the problems asap and keep the GitHub repository active too.

Thanks, Hasan