About the CIBERSORT used in your paper

[Jeremy-qf]

Hi, Xuranw thanks for your great package. I just have a question in your paper. Since you have compared CIBERSORT with MuSiC in your paper, what is the signature for the CIBERSORT you used? Looking forward to your response Thanks Fei

[Jeremy-qf]

What's more, the package "MuSiC" cannot be installed in Windows system (I tried several times and failed finally), but works well in Linux system. Is that right?

[xuranw]

Hi Fei,

Thanks for using MuSiC. CIBERSORT has their own website that will generate signature matrix from single cell reference. MuSiC should be working under Windows system. Could you please provide more info on that?

Best, Xuran

[Jeremy-qf]

Hi Xuranw Thanks for your response. Each time I try to install MuSiC, it appears problems below. Same thing happened in many computers of my friends, and we had to change to linux system finally. Have you successfully installed it in windows before? Thanks Best Fei [Image]

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From: xuranw notifications@github.com Sent: Friday, February 8, 2019 3:20:22 PM To: xuranw/MuSiC Cc: QIN, FEI; Author Subject: Re: [xuranw/MuSiC] About the CIBERSORT used in your paper (#14)

Hi Fei,

Thanks for using MuSiC. CIBERSORT has their own website that will generate signature matrix from single cell reference. MuSiC should be working under Windows system. Could you please provide more info on that?

Best, Xuran

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[xuranw]

Hi Fei,

Sorry, I could not see the image. Yes, I have installed my package on my own computer and my labmates' computers. They are under Windows system.

[Jeremy-qf]

Hey, try to open the image now. I just use the code like:

install devtools if necessary

install.packages('devtools')

install the MuSiC package

devtools::install_github('xuranw/MuSiC')

load

library(MuSiC)

Then error happens.

Thanks

Fei

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发件人: xuranw notifications@github.com 发送时间: 2019年2月9日 5:38:53 收件人: xuranw/MuSiC 抄送: QIN, FEI; Author 主题: Re: [xuranw/MuSiC] About the CIBERSORT used in your paper (#14)

Hi Fei,

Sorry, I could not see the image. Yes, I have installed my package on my own computer and my labmates' computers. They are under Windows system.

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[ectopicaPKC]

devtools::install_github('xuranw/MuSiC') Error in read.dcf(path) : Found continuation line starting ' plyr, ...' at begin of record.

I'm pretty sure that is the error Fei is referring too, as I too just got that error.

Thanks

[xuranw]

Thanks for using MuSiC. Actually I'm not sure what happened.

After searching on Internet, Here is the proposed solution: library(remotes) install_url(url="https://github.com/xuranw/MuSiC/archive/master.zip", INSTALL_opt= "--no-multiarch")

Hope that helps.

Best, Xuran

[ectopicaPKC]

Thanks. That fixed the issue.