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xuranw / MuSiC

Multi-subject Single Cell Deconvolution
https://github.com/xuranw/MuSiC
GNU General Public License v3.0
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object 'GSE50244.EMTAB.prop' not found #40

Closed RinconFer closed 4 years ago

RinconFer commented 4 years ago

Hello,

I am running the tutorial of MuSiC to check that everything runs properly before moving to my own data, but while running the function: m.prop.GSE50244 = rbind(melt(GSE50244.EMTAB.prop$Est.prop.weighted), melt(GSE50244.EMTAB.prop$Est.prop.allgene), melt(Est.prop.bseq), melt(data.matrix(Est.prop.cibersort)))

R print the error: Error in melt(GSE50244.EMTAB.prop$Est.prop.weighted) : object 'GSE50244.EMTAB.prop' not found

I have try to figure it out on my own, for example I found that the link in: "load(gzcon(url('https://xuranw.github.io/MuSiC/data/GSE50244CIBERSORT.RData')))" It is not right (Error 404) and changed it for the one I think could be the right one: 'https://github.com/xuranw/MuSiC/tree/master/vignettes/data/GSE50244CIBERSORT.RData'

I have been looking around trying to find the object 'GSE50244.EMTAB.prop' but I haven't been able.

Thanks for you help, David

mhimanshu11 commented 4 years ago

I think its just a typo error. It should be 'Est.prop.GSE50244' m.prop.GSE50244 = rbind(melt(Est.prop.GSE50244$Est.prop.weighted), melt(Est.prop.GSE50244$Est.prop.allgene))

RinconFer commented 4 years ago

I think its just a typo error. It should be 'Est.prop.GSE50244' m.prop.GSE50244 = rbind(melt(Est.prop.GSE50244$Est.prop.weighted), melt(Est.prop.GSE50244$Est.prop.allgene))

Thank you very much, that worked beautifully.