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xuranw / MuSiC

Multi-subject Single Cell Deconvolution
https://github.com/xuranw/MuSiC
GNU General Public License v3.0
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music_prop.cluster #41

Open mhimanshu11 opened 4 years ago

mhimanshu11 commented 4 years ago

Hi, I am running the code which are available on Tutorial but somehow I am getting the following error, when I run music_prop.cluster

Est.mouse.bulk = music_prop.cluster(bulk.eset = Mouse.bulk.eset, sc.eset = Mousesub.eset, group.markers = Immune.marker, group = 'clusterType', clusters = 'cellType', samples = 'sampleID', clusters.type = clusters.type)

Error in music_prop.cluster(bulk.eset = Mouse.bulk.eset, sc.eset = Mousesub.eset, : Cluster number is not matching!

tpx888 commented 4 years ago

In Xuran`s tutorial, IEmarkers represents a list of Immune cell and Epith cell marker, you need to create a list object including Epith.marker and Immune.marker which download from the last file of this page "https://xuranw.github.io/MuSiC/articles/pages/data.html" , An IEmarkers.RData. After you create a list object that i mentioned above, you should name the list , Epith.marker "C3", Immune.marker "C4", Then, you need to edit "clusters.type", and remove "C1", and "C2“ form list object "clusters.type" .

Jason-bot-stack commented 4 years ago

After I create a list object and name the list , Epith.marker "C3", Immune.marker "C4", Then, I also edit "clusters.type", and remove "C1", and "C2“ form list object "clusters.type" . when I run music_prop.cluster, I meet the follow error:

Error in if (sum(abs(p.weight.new - p.weight)) < eps) { : missing value where TRUE/FALSE needed

woshiyangsi commented 3 years ago

same issues