xuranw / MuSiC

Multi-subject Single Cell Deconvolution
https://github.com/xuranw/MuSiC
GNU General Public License v3.0
231 stars 92 forks source link

unable to install music version 1.0.0 #98

Open xcliu-oc opened 2 years ago

xcliu-oc commented 2 years ago

Hi Wang,

thanks for developing such great package! However, I was not able to install the new version successfully, using the code you provided. here is my R sessions, for your reference.

R version 4.2.1 (2022-06-23) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Monterey 12.5

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] Rcpp_1.0.9 BiocManager_1.30.18 compiler_4.2.1
[4] later_1.3.0 urlchecker_1.0.1 prettyunits_1.1.1
[7] profvis_0.3.7 remotes_2.4.2 tools_4.2.1
[10] digest_0.6.29 pkgbuild_1.3.1 pkgload_1.3.0
[13] memoise_2.0.1 lifecycle_1.0.2 rlang_1.0.6
[16] shiny_1.7.2 cli_3.4.1 rstudioapi_0.14
[19] curl_4.3.2 fastmap_1.1.0 withr_2.5.0
[22] stringr_1.4.1 fs_1.5.2 htmlwidgets_1.5.4
[25] devtools_2.4.4 rprojroot_2.0.3 glue_1.6.2
[28] R6_2.5.1 processx_3.7.0 sessioninfo_1.2.2
[31] callr_3.7.2 purrr_0.3.4 magrittr_2.0.3
[34] ps_1.7.1 promises_1.2.0.1 ellipsis_0.3.2
[37] htmltools_0.5.3 usethis_2.1.6 mime_0.12
[40] xtable_1.8-4 httpuv_1.6.6 stringi_1.7.8
[43] miniUI_0.1.1.1 cachem_1.0.6 crayon_1.5.1

utkarsh0493 commented 2 years ago

@xcliu-oc I am also facing the same issue; using the command mentioned in the README file, devtools::install_github('xuranw/MuSiC'). I get 0.2.0 version.

Were you able to download/install by some other way?

jaclynbeck-sage commented 2 years ago

I am having the same issue. I poked around and it looks like devtools downloaded/installed the latest code, but the actual package info (NAMESPACE, DESCRIPTION) is not updated with the right version number or with all of the new functions exported.

xcliu-oc commented 2 years ago

@jaclynbeck-sage did you download &install an older version of devtools? is it working?

xcliu-oc commented 2 years ago

@xcliu-oc I am also facing the same issue; using the command mentioned in the README file, devtools::install_github('xuranw/MuSiC'). I get 0.2.0 version.

Were you able to download/install by some other way?

I got the same version as yours: v0.2.0

xuranw commented 2 years ago

I have updated MuSiC. Could you please try again? @xcliu-oc @utkarsh0493 @jaclynbeck-sage

xcliu-oc commented 2 years ago

I have updated MuSiC. Could you please try again? @xcliu-oc @utkarsh0493 @jaclynbeck-sage

@xuranw Thank you for updating it! I'm able to install music v1.0.0 sucessfully.

utkarsh0493 commented 2 years ago

@xuranw I could install the newer version. Thank you !

jaclynbeck-sage commented 2 years ago

Success! Thank you :)

lingl456 commented 1 year ago

hi,wang I can't download MuSiC,My R is shown below: devtools::install_github('xuranw/MuSiC') Downloading GitHub repo xuranw/MuSiC@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/xuranw/MuSiC/tarball/HEAD' failed

dinovski commented 12 months ago

@lingl456 I get the same issue (R version 4.3.1 on macOS Ventura 13.5)

JesseRop commented 2 months ago

I get the same issue as well. Was anyone able to solve it?