I would like to know if it was proper to run the command
python2.7 IPMiner.py -dataset=RPI1807
after modifing the input files in the ncRNA-protein directory.
I'll explain it better: I have a dataset of my concern, and would like to train and cross validate IPMiner on it. So I wanted to go down this route: given the interaction in my dataset, formatting them in files of the same setting of your RPI1807 files. Then I would rename them as [RPI1807_PositivePairs.csv, RPI1807_NegativePairs.csv, RPI1807_RNA_seq.fa, RPI1807_protein_seq.fa] and move them in the ncRNA-protein directory.
Hello and thank you for sharing your work.
I would like to know if it was proper to run the command
after modifing the input files in the ncRNA-protein directory. I'll explain it better: I have a dataset of my concern, and would like to train and cross validate IPMiner on it. So I wanted to go down this route: given the interaction in my dataset, formatting them in files of the same setting of your RPI1807 files. Then I would rename them as [RPI1807_PositivePairs.csv, RPI1807_NegativePairs.csv, RPI1807_RNA_seq.fa, RPI1807_protein_seq.fa] and move them in the ncRNA-protein directory.
Then I would run the abovementioned command.
Is this accettable?
Thank you in advance