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xypan1232 / IPMiner

Predicting ncRNA-protein interaction using high-level features based on deep learning
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need help please #9

Closed rominaappierdo closed 2 years ago

rominaappierdo commented 2 years ago

Hello and thank you for sharing your work.

I would like to know if it was proper to run the command

python2.7 IPMiner.py -dataset=RPI1807

after modifing the input files in the ncRNA-protein directory. I'll explain it better: I have a dataset of my concern, and would like to train and cross validate IPMiner on it. So I wanted to go down this route: given the interaction in my dataset, formatting them in files of the same setting of your RPI1807 files. Then I would rename them as [RPI1807_PositivePairs.csv, RPI1807_NegativePairs.csv, RPI1807_RNA_seq.fa, RPI1807_protein_seq.fa] and move them in the ncRNA-protein directory.

Then I would run the abovementioned command.

Is this accettable?

Thank you in advance

xypan1232 commented 2 years ago

Yes, it is OK, you just prepare the data the same as the four files of RPI1807.

rominaappierdo commented 2 years ago

Thank you so much!