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xzhoulab / iDEA

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
GNU General Public License v3.0
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bulk RNAseq data #17

Closed lishashali closed 3 years ago

lishashali commented 3 years ago

Hi iDEA team,Thank you for the great package. Is this method applicable to bulk rnaseq fpkm data?

YingMa0107 commented 3 years ago

Hi @lishashali,

Thanks for your interest in our package. This method is also applicable to bulk RNAseq fpkm data since our method is bulit on summary statistics. Acutally in our iDEA paper, we also have one application on bulk RNAseq data, please see details in the discussion part and supplementary materials (specifically, Supplementary Figure 30 and Supplementary Note 3) if you are interested.