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xzhoulab / iDEA

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
GNU General Public License v3.0
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ENSEMBL #28

Open Flu09 opened 3 months ago

Flu09 commented 3 months ago

I am wondering if this tool works with genes with ENSEMBL IDs

humanpaingeneticslab commented 2 months ago

I believe it would work as long as both the summary statistics file and the pathways file both have their gene identifiers as Ensembl's. You will need to make your own gene annotations file though.

Let me know if you need help (I'm interested too so I'll make my own set with Ensembl's).