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yafeng / proteogenomics_python

python scripts for proteogenomics analysis
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Reason behind score filtering thresholds #7

Closed husensofteng closed 2 years ago

husensofteng commented 2 years ago

I wonder if there is any particular reason for choosing 6<score<10 to filter the PSMs in computing Bayesian FDR?

https://github.com/yafeng/proteogenomics_python/blob/4b1638aa75903225e9ae45892af4cb9f078d7421/BayesClassSpecificFDR.py#L88

husensofteng commented 2 years ago

just found the answer to this here. thanks