search

yala / Mirai

This repository was used to develop Mirai, the risk model described in: Towards Robust Mammography-Based Models for Breast Cancer Risk.
MIT License
112 stars 45 forks source link

Hello #10

Closed 111678900 closed 2 months ago

111678900 commented 7 months ago

Could you please tell me where the JSON file comes from? Earlier, didn't it involve generating PNG images from DICOM files? So where does this JSON file come from?OncoNet main running from commit:

f96f180243140b3c668f5f0507ad1f14d2d27aa1 Update README.mdauthor: Adam Yala, date: 1695579050

Loading data-augmentation scheme...

Loading data... Traceback (most recent call last): File "/root/Mirai/onconet/datasets/abstract_onco_dataset.py", line 51, in init self.metadata_json = json.load(open(args.metadata_path, 'r')) FileNotFoundError: [Errno 2] No such file or directory: '/root/autodl-tmp/AsymMirai/example_data_format.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "scripts/main.py", line 47, in train_data, dev_data, test_data = dataset_factory.get_dataset(args, transformers, test_transformers) File "/root/Mirai/onconet/datasets/factory.py", line 50, in get_dataset train = dataset_class(args, transformers, 'train') File "/root/Mirai/onconet/datasets/abstract_onco_dataset.py", line 57, in init raise Exception(METAFILE_NOTFOUND_ERR.format(args.metadata_path, e)) Exception: Metadata file /root/autodl-tmp/AsymMirai/example_data_format.json could not be parsed! Exception: [Errno 2] No such file or directory: '/root/autodl-tmp/AsymMirai/example_data_format.json'!

yala commented 2 months ago

From your comment, it looks like you're trying to extend AsymMirai. This isn't directly supported in this codebase and I recommend reaching to authors of asym mirai