Closed NicholasCowie closed 3 years ago
Hey Nicholas, first of all thank you for using our tool and reporting that bug!
My first guess would be, that the problem is, (I think) that identifiers of SBML species/parameters/... are not allowed to start with a number, but only with a letter. I will have a more detailed look into this and this also nicely aligns with #99 and #100, which I anyhow wanted to fix later this week :)
Just a short update: This should now also be checked: If in the SBML generation setting an identifier is not successful, yaml2sbml
throws an error for the new release :)
Hi Jakob,
Thanks for getting everything to work so quickly and cheers for the updates :)
Hi :) There appears to be an issue when specifying state variables that begin with a number, a common instance is BiGG identifiers. I receive the following warning from your software when I run the
test_failure.yaml
file which is resolved when I run thetest.yaml
file, the only difference is changing "5mthf" -> "m5mthf". I just guessed that this may be an error and happened to get lucky, so it might be nice for others if there was an explicit warning.Thanks for your help :)
Cheers, Nicholas
example_yaml.zip